SNP Profiles of CCN 51 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	TT	TT	AA	CC	GG	TT	CC	AA	AA	TT	AA
1._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
2._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
3._GC-06-4-1-04	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
4._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
5._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
6._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
7._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
8._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
9._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
10._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
11._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
12._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
13._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
14._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
15._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
16._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
17._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	_	CT	AA
18._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	_	CT	AA
19._RUQ_1737	_	_	GG	_	_	_	_	TT	_	CT	_	AG	_	AA
20._GC-07-19-1-21	AG	AG	CC	AA	AA	AC	AG	AA	_	_	AA	AG	AG	AA
21._RUQ_1736	AG	AG	CC	AA	AA	AC	AG	AA	_	_	AA	AG	AG	AA
22._MITC-000000	AG	AG	CC	AA	AA	AC	AG	AA	_	_	AA	AG	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	TT	CC	CC	TT	GG	CC	CC	CC	GG	CC	CC
1._CCN_51	CT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
2._CCN_51	CT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
3._GC-06-4-1-04	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
4._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
5._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
6._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
7._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
8._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
9._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
10._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
11._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
12._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
13._GC-07-019-1-21	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
14._CCN_51	TT	AA	GG	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
15._GC-07-019-1-21	TT	AA	_	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
16._CCN_51	TT	AA	_	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC
17._GC-07-019-1-21	TT	AA	GG	CT	CC	_	GG	AG	CT	_	CC	TT	CT	AC
18._CCN_51	TT	AA	GG	CT	CC	_	GG	AG	CT	_	CC	TT	CT	AC
19._RUQ_1737	_	_	_	_	_	CC	GG	AG	_	CC	CC	_	_	AA
20._GC-07-19-1-21	AA	AA	GG	AG	GG	GG	CC	_	AG	CC	CC	AA	_	AC
21._RUQ_1736	AA	AA	GG	AG	GG	GG	CC	_	AG	CC	CC	AA	_	AC
22._MITC-000000	AA	AA	GG	AG	GG	GG	CC	_	AG	CC	CC	AA	_	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	GG	TT	TT	GG	GG	CC	TT	GG	AA	AA	GG	X_X	X_X
1._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
2._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
3._GC-06-4-1-04	AG	GG	AA	CT	AA	_	AA	CC	TT	AC	TT	GG	X_X	X_X
4._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
5._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
6._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
7._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
8._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
9._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
10._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
11._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
12._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
13._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
14._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
15._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
16._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
17._GC-07-019-1-21	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
18._CCN_51	AG	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
19._RUQ_1737	_	_	_	_	AA	_	_	_	_	AC	_	_	X_X	X_X
20._GC-07-19-1-21	_	GG	AA	AG	AA	CG	AA	GG	AA	AC	TT	GG	X_X	X_X
21._RUQ_1736	_	GG	AA	AG	AA	CG	AA	GG	AA	AC	TT	GG	X_X	X_X
22._MITC-000000	_	GG	AA	AG	AA	CG	AA	GG	AA	AC	TT	GG	X_X	X_X

Input profile: CCN_51

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._CCN_51

51.3 %
40 shared markers

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USAPEN

Dapeng Zhang, 2016

2._CCN_51

51.3 %
40 shared markers

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USASPC

Dapeng Zhang, 2016

3._CCN_51 GC-06-4-1-04

50 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

4._CCN_51

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._CCN_51 GC-07-019-1-21

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

6._CCN_51 GC-07-019-1-21

50 %
40 shared markers

Reference View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

7._CCN_51 GC-07-019-1-21

50 %
40 shared markers

Verified View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

8._CCN_51 GC-07-019-1-21

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

9._CCN_51

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

10._CCN_51

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

11._CCN_51

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

12._CCN_51

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

13._CCN_51 GC-07-019-1-21

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

14._CCN_51

50 %
40 shared markers

Verified View View all Any

Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

15._CCN_51 GC-07-019-1-21

48.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

16._CCN_51

48.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

17._CCN_51 GC-07-019-1-21

47.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

18._CCN_51

47.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

19._CCN_51 RUQ_1737

46.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

20._CCN_51 GC-07-19-1-21

34.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1

Notes: Brazil_Selections_Poss_grandparent

21._CCN_51 RUQ_1736

34.3 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._CCN_51 MITC-000000

34.3 %
35 shared markers

Offtype View View all

USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25